Reference

All functions

GeomFlatViolin

geom_flat_violin_HELPER2

baseline_data()

Baseline pupil data to the average pupil size within a window

calculate_mean_pupil_size()

Calculate a mean size across two pupils over time

calculate_missing_data()

Calculate the missing data amount

clean_missing_data()

Clean missing data above an acceptable threshold

create_difference_data()

Create a difference data frame when dealing with a condition column with 2 levels

create_functional_data()

Makes a functional data with splines from a Pupil_difference_data dataframe.

create_time_windows()

Make PupillometryR dataframe into multiple time windows for easy analysis

create_window_data()

Make PupillometryR dataframe into a single collapsed window for easy analysis

detect_blinks_by_column()

detect blinks by a pre-existing labelled blink column that comes from the eyetracker

detect_blinks_by_size()

detect blinks by a change in pupil size

detect_blinks_by_velocity()

detect blinks by a change in velocity

downsample_time_data()

Downsample frequency to reduce number of samples and data size

filter_data()

Run a filter on the data to smooth it out.

geom_flat_violin()

ggplot Flat Violin

gfv_helper1 %||%

geom_flat_violin_HELPER1

interpolate_data()

Interpolate across the gaps in data

make_pupillometryr_data()

Prepare data for pre-processing in PupillometryR

mean2()

Helper function mean2

plot(<Pupil_difference_data>)

Pre-prepared plots of PupillometryR data

plot(<Pupil_test_data>)

Pre-prepared plots of PupillometryR data

plot(<Pupil_window_data>)

Pre-prepared plots of PupillometryR data

plot(<PupillometryR>)

Pre-prepared plots of PupillometryR data

pupil_data

Data collected in a pupillometry study by Sylvain Sirois

regress_data()

Regress one pupil against another for extra smoothing

replace_missing_data()

replaces missing observations if you have some degree of incomplete observations

run_functional_t_test()

Run a functional t-test on a dataframe previously fitted with b-splines.

subset_data()

Subset data to provide start and finish time windows